Prework
Description
When interrogating a DuckDB table (using DBI) I get the following error:
Error in if (grepl("sql server|sqlserver", tbl_src_details)) { :
argument is of length zero
Looks like it comes from here.
When I run unclass on my table it gives me the following:
r$> merged %>% unclass
$src
src: DuckDB v1.2.1 [brunopereira@Linux 6.8.0-90-generic:R 4.5.2/:memory:]
tbls:
$lazy_query
From: <derived table>
Which then causes problems when the grepl expression runs.
Reproducible example
library(duckdb)
library(tidyverse)
library(pointblank)
con <- dbConnect(duckdb())
merged <- tbl(con, "'my_table.parquet'")
ucan_agent <- yaml_read_agent("my_validator.yaml") %>% interrogate()
Expected result
Interrogation should finish normally and not throw an error..
Session info
R version 4.5.2 (2025-10-31)
Platform: x86_64-pc-linux-gnu
Running under: Ubuntu 22.04.5 LTS
Matrix products: default
BLAS/LAPACK: /home/brunopereira/miniforge3/lib/libopenblasp-r0.3.27.so; LAPACK version 3.12.0
locale:
[1] LC_CTYPE=en_CA.UTF-8 LC_NUMERIC=C LC_TIME=en_CA.UTF-8 LC_COLLATE=en_CA.UTF-8 LC_MONETARY=en_CA.UTF-8 LC_MESSAGES=en_CA.UTF-8 LC_PAPER=en_CA.UTF-8 LC_NAME=C LC_ADDRESS=C
[10] LC_TELEPHONE=C LC_MEASUREMENT=en_CA.UTF-8 LC_IDENTIFICATION=C
time zone: America/Toronto
tzcode source: system (glibc)
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] duckdb_1.2.1 DBI_1.2.3 pointblank_0.12.3 arrow_19.0.1.1 lubridate_1.9.4 forcats_1.0.0 stringr_1.5.1 dplyr_1.1.4 purrr_1.2.0 readr_2.1.5 tidyr_1.3.1 tibble_3.2.1 ggplot2_3.5.2 tidyverse_2.0.0
loaded via a namespace (and not attached):
[1] gtable_0.3.6 xfun_0.52 processx_3.8.6 callr_3.7.6 tzdb_0.5.0 ps_1.9.1 vctrs_0.6.5 tools_4.5.2 generics_0.1.3 curl_6.2.2 parallel_4.5.2 blob_1.2.4 pkgconfig_2.0.3
[14] dbplyr_2.5.0 RColorBrewer_1.1-3 assertthat_0.2.1 gt_1.1.0 lifecycle_1.0.4 compiler_4.5.2 farver_2.1.2 litedown_0.7 htmltools_0.5.8.1 sass_0.4.10 yaml_2.3.10 pillar_1.10.2 crayon_1.5.3
[27] commonmark_1.9.5 tidyselect_1.2.1 digest_0.6.37 stringi_1.8.7 fastmap_1.2.0 grid_4.5.2 blastula_0.3.6 cli_3.6.5 magrittr_2.0.3 utf8_1.2.5 clipr_0.8.0 withr_3.0.2 scales_1.4.0
[40] bit64_4.6.0-1 timechange_0.3.0 rmarkdown_2.29 bit_4.6.0 hms_1.1.3 evaluate_1.0.3 knitr_1.50 V8_6.0.3 markdown_2.0 rlang_1.1.6 Rcpp_1.0.14 glue_1.8.0 juicyjuice_0.1.0
[53] xml2_1.3.8 reprex_2.1.1 rstudioapi_0.17.1 vroom_1.6.5 jsonlite_2.0.0 R6_2.6.1 fs_1.6.6
Prework
Description
When interrogating a DuckDB table (using DBI) I get the following error:
Looks like it comes from here.
When I run unclass on my table it gives me the following:
Which then causes problems when the grepl expression runs.
Reproducible example
Expected result
Interrogation should finish normally and not throw an error..
Session info