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@AllenInstitute

Allen Institute

Please visit http://alleninstitute.github.io/ for more information.

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  1. AllenSDK AllenSDK Public

    code for reading and processing Allen Institute for Brain Science data

    Jupyter Notebook 374 160

  2. dipde dipde Public

    Numerical solver for coupled population density equations

    Python 25 15

Repositories

Showing 10 of 463 repositories
  • abc_atlas_access Public

    Documentation and examples demonstrating how to access data from the Allen Brain Cell Atlas

    AllenInstitute/abc_atlas_access’s past year of commit activity
    Jupyter Notebook 96 33 19 6 Updated Feb 3, 2026
  • aibs-informatics-aws-utils Public

    Library of generic Python AWS utils used by the AIBS Informatics "Marmot" team

    AllenInstitute/aibs-informatics-aws-utils’s past year of commit activity
    Python 1 0 2 0 Updated Feb 3, 2026
  • MIES Public

    Multichannel Igor Electrophysiology Suite

    AllenInstitute/MIES’s past year of commit activity
    IGOR Pro 29 9 271 11 Updated Feb 3, 2026
  • acq4 Public Forked from acq4/acq4

    Data acquisition for patch clamp ephys / optogenetics / imaging experiments

    AllenInstitute/acq4’s past year of commit activity
    Python 1 MIT 53 0 3 Updated Feb 3, 2026
  • deep_ccf_registration Public

    Arbitrary modality registration to CCFv3 using deep learning

    AllenInstitute/deep_ccf_registration’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Feb 3, 2026
  • neuron-proofreader Public

    NeuronProofreader is a Python library for automated proofreading of split and merge mistakes in neuron reconstructions.

    AllenInstitute/neuron-proofreader’s past year of commit activity
    Python 6 MIT 0 0 1 Updated Feb 3, 2026
  • aibs-informatics-aws-lambda Public

    AWS Lambda library for AIBS Informatics lambda functions

    AllenInstitute/aibs-informatics-aws-lambda’s past year of commit activity
    Python 1 0 0 1 Updated Feb 3, 2026
  • aibs-informatics-cdk-lib Public

    Library for AWS CDK Constructs related to AIBS Informatics Services

    AllenInstitute/aibs-informatics-cdk-lib’s past year of commit activity
    Python 1 0 0 1 Updated Feb 3, 2026
  • jem Public

    Repository containing JEM (JSON Electrophysiology Metadata), a web-form for logging metadata during slice electrophysiology experiments.

    AllenInstitute/jem’s past year of commit activity
    HTML 5 4 0 0 Updated Feb 2, 2026
  • vis Public

    Typescript packages for building big-data visualization tools & components, with examples for a variety of common data types & formats

    AllenInstitute/vis’s past year of commit activity
    TypeScript 6 BSD-3-Clause 1 11 8 Updated Feb 2, 2026
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