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@KrishnaswamyLab

Krishnaswamy Lab

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  1. PHATE PHATE Public

    PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

    Python 534 79

  2. MAGIC MAGIC Public

    MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

    Jupyter Notebook 378 100

  3. SAUCIE SAUCIE Public

    Python 102 28

  4. MELD MELD Public

    Quantifying experimental perturbations at single cell resolution

    Python 113 10

  5. Multiscale_PHATE Multiscale_PHATE Public

    Creating multi-resolution embeddings and clusters from high dimensional data

    Jupyter Notebook 58 11

  6. TrajectoryNet TrajectoryNet Public

    TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics

    Jupyter Notebook 130 16

Repositories

Showing 10 of 95 repositories
  • ImmunoStruct Public

    [Nature Machine Intelligence] ImmunoStruct enables multimodal deep learning for immunogenicity prediction

    KrishnaswamyLab/ImmunoStruct’s past year of commit activity
    Python 35 9 5 0 Updated Feb 18, 2026
  • ProtSCAPE-Net Public
    KrishnaswamyLab/ProtSCAPE-Net’s past year of commit activity
    Python 0 0 0 0 Updated Feb 17, 2026
  • GRASSY-Net Public
    KrishnaswamyLab/GRASSY-Net’s past year of commit activity
    Jupyter Notebook 1 4 0 0 Updated Feb 17, 2026
  • CUTS Public

    [MICCAI 2024] CUTS: A Deep Learning and Topological Framework for Multigranular Unsupervised Medical Image Segmentation

    KrishnaswamyLab/CUTS’s past year of commit activity
    Python 20 1 0 0 Updated Feb 14, 2026
  • ImageFlowNet Public

    [ICASSP 2025 Oral] ImageFlowNet: Forecasting Multiscale Image-Level Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images

    KrishnaswamyLab/ImageFlowNet’s past year of commit activity
    Python 23 3 0 0 Updated Feb 14, 2026
  • HiPoNet Public
    KrishnaswamyLab/HiPoNet’s past year of commit activity
    Jupyter Notebook 8 2 0 0 Updated Feb 6, 2026
  • Template Public

    Lab repository template.

    KrishnaswamyLab/Template’s past year of commit activity
    2 0 0 0 Updated Jan 30, 2026
  • PHATE Public

    PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

    KrishnaswamyLab/PHATE’s past year of commit activity
    Python 534 79 35 1 Updated Jan 26, 2026
  • RiTINI Public

    Regulatory Temporal Interaction Network Inference

    KrishnaswamyLab/RiTINI’s past year of commit activity
    Jupyter Notebook 12 2 1 0 Updated Jan 21, 2026
  • Beta-Cell-Driven-PDAC Public

    Codebase for "Beta cells are essential drivers of pancreatic ductal adenocarcinoma development"

    KrishnaswamyLab/Beta-Cell-Driven-PDAC’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Jan 20, 2026
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