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Tolias Lab

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  1. scanreader scanreader Public

    Python TIFF Stack Reader for ScanImage 5 scans (including multiROI).

    Python 13 16

  2. FPGAEyeTracker FPGAEyeTracker Public

    FPGA EyeTracker

    LabVIEW 5 3

  3. neuropixel-pipeline neuropixel-pipeline Public

    Schemata and libraries for ingesting and clustering Neuropixel data

    Python 5 2

  4. cov-est cov-est Public

    Covariance estimation library used in "Improved Estimation and Interpretation of Correlations in Neural Circuits."

    MATLAB 4 4

  5. ephys-preprocessing ephys-preprocessing Public

    Pre-processing (LFP extraction, spike detection etc.) for electrophysiology data

    MATLAB 3

  6. atflow atflow Public

    TensorFlow library for Andreas Tolias lab

    Python 2 2

Repositories

Showing 10 of 47 repositories
  • mouse-neuropixel-export Public

    This repository contains code and tutorials for working with mouse neuropixel data

    atlab/mouse-neuropixel-export’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Jan 15, 2026
  • devenv-engine Public Forked from nauticalab/devenv-engine

    Core execution engine for DevENVs

    atlab/devenv-engine’s past year of commit activity
    Go 0 Apache-2.0 1 0 0 Updated Oct 27, 2025
  • pipeline-tp-gui Public

    Website for interactions with our two-photon pipeline.

    atlab/pipeline-tp-gui’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 27, 2025
  • base-images Public
    atlab/base-images’s past year of commit activity
    0 1 0 0 Updated Sep 17, 2025
  • pipeline Public Forked from cajal/pipeline

    Schemata and libraries for neuroscientific data

    atlab/pipeline’s past year of commit activity
    Python 0 LGPL-3.0 47 1 1 Updated Sep 17, 2025
  • polars_workshop_2025 Public Forked from enigma-brain/polars_workshop_2025

    Polars workshop 2025

    atlab/polars_workshop_2025’s past year of commit activity
    Jupyter Notebook 0 2 0 0 Updated Aug 21, 2025
  • enty Public

    lightweight ORM with a simple interface

    atlab/enty’s past year of commit activity
    Python 0 LGPL-2.1 2 0 0 Updated Jun 7, 2025
  • datajoint-python Public Forked from datajoint/datajoint-python

    Relational data pipelines for the science lab

    atlab/datajoint-python’s past year of commit activity
    Python 0 LGPL-2.1 96 0 0 Updated May 22, 2025
  • mosaic-picasso Public Forked from xing-lab-pitt/mosaic-picasso

    Crosstalk removal for multiplex fluorescence imaging; Method for calculating and eliminating LBM cavity crosstalk

    atlab/mosaic-picasso’s past year of commit activity
    Jupyter Notebook 0 5 0 0 Updated Nov 5, 2024
  • PatchViewer Public

    Slice imaging program for patching

    atlab/PatchViewer’s past year of commit activity
    LabVIEW 0 0 0 0 Updated Jun 26, 2024

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