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TPM Calculator Analysis for Coral Project#1

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sturkarslan merged 4 commits intomainfrom
tpmcalc_ykat
Mar 30, 2026
Merged

TPM Calculator Analysis for Coral Project#1
sturkarslan merged 4 commits intomainfrom
tpmcalc_ykat

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@ykatariy ykatariy commented Mar 23, 2026

Major Updates:

  • Added a new post_processing folder containing downstream analyses performed on outputs from the main Global_Search pipeline.
  • Added GFF3 → GTF conversion helper scripts in ./post_processing/TPMCalculator/scripts/gff3_to_gtf_fixes for handling annotation formatting issues required for TPMCalculator.
  • Added scripts to run TPMCalculator, combine per-sample outputs into expression matrices, and perform basic downstream analysis in ./post_processing/TPMCalculator/scripts/.
  • Added a README with installation instructions and a brief overview of the TPMCalculator workflow.

All paths to files/folders on eager have been removed and replaced with <path/to/..>.

@ykatariy ykatariy requested a review from sturkarslan March 23, 2026 20:14
@ykatariy ykatariy self-assigned this Mar 23, 2026
@sturkarslan sturkarslan merged commit f52e1a0 into main Mar 30, 2026
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@ykatariy ykatariy deleted the tpmcalc_ykat branch March 30, 2026 21:39
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2 participants