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@epiverse-trace

Epiverse-TRACE

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  1. sivirep sivirep Public

    Data Wrangling and Automated Reports from 'SIVIGILA' source

    R 42 6

  2. epiparameter epiparameter Public

    R package with classes and helper functions for working with epidemiological parameters and access to a library of epidemiological parameters for infectious diseases

    R 36 13

  3. serofoi serofoi Public

    Estimates the Force-of-Infection of a given pathogen from population based sero-prevalence studies

    R 21 3

  4. vaccineff vaccineff Public

    R package with tools for estimating vaccine effectiveness and vaccine related metrics

    R 16 4

  5. finalsize finalsize Public

    R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

    R 15 6

  6. epidemics epidemics Public

    A library of published compartmental epidemic models, and classes to represent demographic structure, non-pharmaceutical interventions, and vaccination regimes, to compose epidemic scenarios.

    R 15 5

Repositories

Showing 10 of 70 repositories
  • tutorials-early Public

    Tutorials to learn reading, cleaning and validating case data, and converting line list data to incidence for visualizing epidemic curves.

    epiverse-trace/tutorials-early’s past year of commit activity
    R 5 7 42 6 Updated Feb 13, 2026
  • etdashboard Public

    Developer dashboard for a universe overview of Epiverse-TRACE packages

    epiverse-trace/etdashboard’s past year of commit activity
    R 2 1 0 0 Updated Feb 13, 2026
  • etstats Public
    epiverse-trace/etstats’s past year of commit activity
    JavaScript 1 CC0-1.0 1 0 0 Updated Feb 11, 2026
  • tutorials-middle Public

    Tutorials to learn real-time analysis that includes accessing epidemiological delays, estimating transmission metrics, forecasting, and severity from aggregated incidence data, superspreading from line list and contact data, and simulating transmission chains.

    epiverse-trace/tutorials-middle’s past year of commit activity
    R 3 6 74 (3 issues need help) 5 Updated Feb 11, 2026
  • tutorials-early-fr Public Forked from epiverse-trace/tutorials-early

    Tutorials to learn reading, cleaning and validating case data, and converting line list data to incidence for visualizing epidemic curves.

    epiverse-trace/tutorials-early-fr’s past year of commit activity
    R 0 7 0 0 Updated Feb 10, 2026
  • epimodelac-en Public Forked from epiverse-trace/epimodelac

    Training materials for the epimodelac workshop

    epiverse-trace/epimodelac-en’s past year of commit activity
    R 1 6 0 0 Updated Feb 10, 2026
  • EpiTKit-FR Public Forked from epiverse-trace/EpiTKit-EN
    epiverse-trace/EpiTKit-FR’s past year of commit activity
    R 0 5 0 0 Updated Feb 10, 2026
  • tutorials-late Public

    Tutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.

    epiverse-trace/tutorials-late’s past year of commit activity
    R 2 3 42 6 Updated Feb 10, 2026
  • tutorials-late-fr Public Forked from epiverse-trace/tutorials-late

    Tutorials to learn accessing and analyzing social contact matrices, scenario modelling to simulate disease spread and investigate interventions, and modelling disease burden.

    epiverse-trace/tutorials-late-fr’s past year of commit activity
    R 0 3 0 0 Updated Feb 10, 2026
  • epitkit Public
    epiverse-trace/epitkit’s past year of commit activity
    R 0 5 7 3 Updated Feb 10, 2026
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