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Pull requests: nf-core/modules

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Pull requests list

Integrate multiqcsav into bcl_demultiplex subworkflow
#10117 opened Feb 19, 2026 by delfiterradas • Draft
17 tasks
1
@delfiterradas
1
new module: pharmcat/phenotyper new module Adding a new module Ready for Review
#10116 opened Feb 19, 2026 by ramsainanduri Loading…
12 of 14 tasks
1
@ramsainanduri
1
Update cadd recipe to use topic versions Ready for Review
#10115 opened Feb 19, 2026 by ramprasadn Loading…
17 tasks
migrate all remaining picards modules to versions topics
#10114 opened Feb 19, 2026 by maxulysse Loading…
17 tasks
Topics for a bunch of SV related modules
#10113 opened Feb 19, 2026 by nvnieuwk Loading…
17 tasks
4
Nextflow lint cleanup sratools/prefetch
#10109 opened Feb 19, 2026 by LouisLeNezet • Draft
@LouisLeNezet
Add BCFtools - plotvcfstats module
#10100 opened Feb 18, 2026 by yz533cb Loading…
10 of 17 tasks
@yz533cb
9
Paraphase update
#10099 opened Feb 18, 2026 by bagnacan Loading…
3 tasks done
4
Add MacSyFinder modules for model management and protein system detection
#10074 opened Feb 17, 2026 by Copilot AI • Draft
1
@brovolia
5
new module: gatk4/analyzecovariates new module Adding a new module
#10063 opened Feb 16, 2026 by thomasisensee Loading…
14 tasks done
1
1
Migrate hmtnote to topic versions
#10062 opened Feb 16, 2026 by emmadizdarevic • Draft
17 tasks
Fix labeler workflow for fork PRs using workflow_run pattern
#10045 opened Feb 16, 2026 by Copilot AI • Draft
@ewels
7
Add new module: qcatch
#10032 opened Feb 13, 2026 by an-altosian Loading…
16 of 17 tasks
@fmalmeida
7
Deacon index set operations
#10027 opened Feb 13, 2026 by pmoris Loading…
17 tasks
2
DO NOT MERGE: clean repo, and more strict syntax fixes
#10016 opened Feb 13, 2026 by maxulysse • Draft
17 tasks
1
New module: lsa/cosine (calculate cosine similarity)
#10002 opened Feb 12, 2026 by miguelrosell Loading…
12 tasks done
25
give bwamem2/index a makeover
#9997 opened Feb 12, 2026 by maxulysse Loading…
17 tasks
5
Avoid redundant index steps for shared refs
#9983 opened Feb 12, 2026 by pmoris Loading…
1 of 17 tasks
9
Module to build local snpEff database
#9967 opened Feb 11, 2026 by pmoris Loading…
6 of 17 tasks
FASTQC: multiqc_files topic
#9964 opened Feb 10, 2026 by maxulysse Loading…
17 tasks
27
Telescope
#9948 opened Feb 9, 2026 by hanalysis Loading…
9 tasks done
1
7
Change output directory and file names for bwa index
#9947 opened Feb 9, 2026 by pmoris Loading…
12 of 17 tasks
5
ci: add Graphite CI Optimizer size/s
#9911 opened Feb 5, 2026 by edmundmiller Loading…
@edmundmiller
2
Add rgi/bwt
#9873 opened Feb 3, 2026 by vinisalazar Loading…
17 tasks done
7
Add fastqscreen aligner option
#9854 opened Feb 3, 2026 by pmoris Loading…
5 of 17 tasks
2
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