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One Codex

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  1. needletail needletail Public

    Fast FASTX parsing and k-mer methods in Rust

    Rust 208 29

  2. rust-bfield rust-bfield Public

    B-field implementation in Rust

    Rust 204 4

  3. finch-rs finch-rs Public

    A genomic minhashing implementation in Rust

    Rust 101 8

  4. taxonomy taxonomy Public

    Python and Rust library for loading, saving, and manipulating taxonomic trees

    Rust 49 2

  5. sars-cov-2 sars-cov-2 Public

    SARS-CoV-2 variant calling and consensus assembly pipeline

    Jupyter Notebook 26 6

  6. onecodex onecodex Public

    Command line interface and Python client library for the One Codex API

    Python 24 12

Repositories

Showing 10 of 62 repositories
  • onecodex Public

    Command line interface and Python client library for the One Codex API

    onecodex/onecodex’s past year of commit activity
    Python 24 MIT 12 29 5 Updated Jan 30, 2026
  • needletail Public

    Fast FASTX parsing and k-mer methods in Rust

    onecodex/needletail’s past year of commit activity
    Rust 208 MIT 29 14 0 Updated Jan 27, 2026
  • docker-onecodex-notebook Public

    Docker image with a Jupyter notebook environment for embedded use on One Codex

    onecodex/docker-onecodex-notebook’s past year of commit activity
    HTML 2 MIT 1 3 3 Updated Jan 21, 2026
  • taxonomy Public

    Python and Rust library for loading, saving, and manipulating taxonomic trees

    onecodex/taxonomy’s past year of commit activity
    Rust 49 MIT 2 8 0 Updated Jan 15, 2026
  • docker-onecodex-cli Public

    DEPRECATED: Old image with One Codex CLI - please install directly now

    onecodex/docker-onecodex-cli’s past year of commit activity
    Python 0 0 0 1 Updated Dec 8, 2025
  • gdl Public Forked from audy/gdl

    A fast, easy-to-use, command-line tool for downloading genome assemblies from NCBI GenBank (RefSeq).

    onecodex/gdl’s past year of commit activity
    Rust 1 MIT 1 0 0 Updated Jul 22, 2025
  • taxonomy-time-machine Public

    NCBI Taxonomy History Browser

    onecodex/taxonomy-time-machine’s past year of commit activity
    Vue 10 MIT 1 2 1 Updated Jul 22, 2025
  • potion Public Forked from biosustain/potion

    Flask-Potion is a RESTful API framework for Flask and SQLAlchemy, Peewee or MongoEngine

    onecodex/potion’s past year of commit activity
    Python 0 54 0 1 Updated Jul 14, 2025
  • rust-bfield Public

    B-field implementation in Rust

    onecodex/rust-bfield’s past year of commit activity
    Rust 204 Apache-2.0 4 4 0 Updated Jun 24, 2025
  • finch-rs Public

    A genomic minhashing implementation in Rust

    onecodex/finch-rs’s past year of commit activity
    Rust 101 MIT 8 13 2 Updated Jun 17, 2025
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