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@waldronlab

Waldron Lab at the CUNY SPH

Software and educational materials from the Waldron lab for computational biostatistics at the CUNY SPH in New York City

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  1. MultiAssayExperiment MultiAssayExperiment Public

    Bioconductor package for management of multi-assay data

    R 73 34

  2. curatedMetagenomicData curatedMetagenomicData Public

    Curated Metagenomic Data of the Human Microbiome

    R 150 31

  3. curatedTCGAData curatedTCGAData Public

    Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

    R 44 9

  4. cBioPortalData cBioPortalData Public

    Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment

    R 33 13

  5. presentations presentations Public

    A repository for public presentations

    TeX 6 9

  6. BugSigDB BugSigDB Public

    A microbial signatures database

    PHP 8 8

Repositories

Showing 10 of 115 repositories
  • BugSigDBExports Public

    BugSigDB data files

    waldronlab/BugSigDBExports’s past year of commit activity
    R 3 4 5 1 Updated Feb 18, 2026
  • bioanalyzer-backend Public

    Streamline BugSigDB curation with AI-powered scientific paper analysis. Automatically extracts essential microbiome study metadata from research papers, reducing manual curation time and improving data quality for the BugSigDB database.

    waldronlab/bioanalyzer-backend’s past year of commit activity
    Python 0 0 7 0 Updated Feb 18, 2026
  • curatedMetagenomicDataCuration Public

    Sample Metadata Curation for curatedMetagenomicData

    waldronlab/curatedMetagenomicDataCuration’s past year of commit activity
    R 30 24 20 (2 issues need help) 1 Updated Feb 17, 2026
  • czieoss6-biocgpu Public

    Website tracking repositories related to czieoss6-biocgpu

    waldronlab/czieoss6-biocgpu’s past year of commit activity
    0 0 0 0 Updated Feb 18, 2026
  • HistoImagePlot Public
    waldronlab/HistoImagePlot’s past year of commit activity
    R 0 0 0 0 Updated Feb 17, 2026
  • BugSigDBcuration Public

    For documenting issues related to BugSigDB curation.

    waldronlab/BugSigDBcuration’s past year of commit activity
    17 13 118 3 Updated Feb 17, 2026
  • bugphyzzExports Public
    waldronlab/bugphyzzExports’s past year of commit activity
    R 1 1 3 0 Updated Feb 15, 2026
  • OmicsMLRepoData Public

    Translate Bioconductor resources into AI/ML-ready format + Manual curation/harmonization of the metadata for improved usability

    waldronlab/OmicsMLRepoData’s past year of commit activity
    R 4 0 9 (2 issues need help) 2 Updated Feb 15, 2026
  • imageFeatureTCGA Public
    waldronlab/imageFeatureTCGA’s past year of commit activity
    R 1 1 11 (1 issue needs help) 0 Updated Feb 13, 2026
  • imageTCGAutils Public

    Misc. scripts for handling cancerdatasci data

    waldronlab/imageTCGAutils’s past year of commit activity
    R 0 1 0 0 Updated Feb 13, 2026
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